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PREVIEW: PhyloPipeline - A Multiple-Sequence-Alignment and Phylogenetic Tree Pipeline in Python

  • Writer: Ian Bollinger
    Ian Bollinger
  • Dec 9, 2022
  • 1 min read

TL;DR

Generate a MUSCLE Alignment based on either a Folder with Fasta files or NCBI Search Criteria and then output three (3) statistically supported trees: Neighbor Joining, Consensus Bootstrap, and the IQ-Tree output. A GUI will load in window where you can toggle between the three (3) options:

  1. Compile as Folder with ONLY FASTA files in it

  2. Search NCBI for a GENE AND ORGANISM and RETURN MAX RECORDS for compilation

  3. Load an already generated sequence file or multiple sequence alignment (MSA) for tree generation



 

Created in conjunction with and for public use for the Entheome Foundation:


 
 
 

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